Grupos de investigación

Publicaciones / Publications

Publicaciones recientes relacionadas con el plegamiento de proteínas /
Recent publications related to the protein folding problem


Joao N.C. Especial, Antonio Rey and Patrícia F.N. Faísca, "A note on the effect of linear topology preservation in Monte Carlo simulations of knotted proteins". Int. J. Mol. Sci. 23, 13871 (2022).

Beatriz Fernández del Río and Antonio Rey, "Behavior of Proteins under Pressure from Experimental Pressure-Dependent Structures". J Phys. Chem. B 125, 6179 - 6191 (2021).

João N.C. Especial, Ana Nunes, Antonio Rey and Patricia FN Faisca, “Hydrophobic confinement modulates thermal stability and assists knotting in the folding of tangled proteins”. Phys. Chem. Chem. Phys. 21, 11764 – 11775 (2019).

Ana M. Rubio and Antonio Rey, “Design of a structure-based model for protein folding from flexible conformations”. Phys. Chem. Chem. Phys. 21, 6544 – 6552 (2019).

Miguel A. Soler, Antonio Rey and Patrícia F.N. Faísca, “Steric confinement and enhanced local flexibility assist knotting in simple models of protein folding”. Phys. Chem. Chem. Phys. 18, 36391 – 26403 (2016).

Heinrich Krobath, Antonio Rey, and Patrícia FN Faísca, “How determinant is N-terminal to C-terminal coupling for protein folding?”. Phys. Chem. Chem. Phys.17, 3512 – 3524 (2015).

María Larriva and Antonio Rey, “Design of a rotamer library for coarse-grained models in protein folding simulations”. J. Chem. Inform. Model. 54, 302 – 313 (2014).

Vicente González-Charro and Antonio Rey, "Intermediates in the folding equilibrium of repeat proteins from the TPR family". Eur. Biophys. J. 43, 433 – 443 (2014).

Marta Enciso and Antonio Rey, "Sketching protein aggregation with a physics-based toy model". J. Chem. Phys. 139, 115101 (2013).

Ramiro Perezzan and Antonio Rey, "Simulating protein unfolding under pressure with a coarse-grained model". J. Chem. Phys. 137, 185102 (2012).,

Patrícia F.N. Faísca, Rui D.M. Travasso, Andrea Parisi and Antonio Rey´ “Why do protein folding rates correlate with metrics of native topology?”. PLoS One 7, e35599 (2012).

Marta Enciso and Antonio Rey, “Simple model for the simulation of peptide folding and aggregation with different sequences”. J. Chem. Phys. 136, 215103 (2012).

Marta Enciso and Antonio Rey, “Improvement of Structure-Based Potentials for Protein Folding by Native and Nonnative Hydrogen Bonds”. Biophys. J. 101, 1474 –1482 (2011).

Rui D.M. Travasso, Patrícia F.N. Faísca and Antonio Rey, “The protein folding transition state: Insights from kinetics and thermodynamics”. J. Chem. Phys. 133, 125102 (2010).

Ma Fernanda Rey-Stolle, Marta Enciso and Antonio Rey, Topology-based models and NMR structures in protein folding simulations”. J. Comput. Chem. 30, 1212 –1219 (2009).

Lidia Prieto and Antonio Rey, “Influence of the native topology on the folding barrier for small proteins”. J. Chem. Phys. 127, 175101 (2007).

David de Sancho and Antonio Rey, “Evaluation of Coarse Grained Models for Hydrogen Bonds in Proteins”. J. Comput. Chem. 28, 1187 – 1199 (2007).

David de Sancho, Lidia Prieto, Ana M. Rubio and Antonio Rey, “Evolutionary method for the assembly of rigid protein fragments”. J. Comput. Chem. 26, 131 –141 (2005).